Export SBML (pysb.export.sbml)¶
Module containing a class for exporting a PySB model to SBML using libSBML
For information on how to use the model exporters, see the documentation
for pysb.export.
- class pysb.export.sbml.SbmlExporter(*args, **kwargs)[source]¶
A class for returning the SBML for a given PySB model.
Inherits from
pysb.export.Exporter, which implements basic functionality for all exporters.- convert(level=(3, 2))[source]¶
Convert the PySB model to a libSBML document
Requires the libsbml python package
- Parameters:
- level: (int, int)
The SBML level and version to use. The default is SBML level 3, version 2. Conversion to other levels/versions may not be possible or may lose fidelity.
- Returns:
- libsbml.SBMLDocument
A libSBML document converted form the PySB model
- export(level=(3, 2))[source]¶
Export the SBML for the PySB model associated with the exporter
Requires libsbml package.
- Parameters:
- level: (int, int)
The SBML level and version to use. The default is SBML level 3, version 2. Conversion to other levels/versions may not be possible or may lose fidelity.
- Returns:
- string
String containing the SBML output.